Alexander Schönhuth: Teaching and Supervision

Teaching

• Winter 2008   Gene Expression Analysis, Problem Based Learning Course Section, University of British Columbia / Simon Fraser University
• Fall 2007   Computational Biology, Lecture, Simon Fraser University
• 2006/2007   Mathematical Learning Theory, Seminar, University of Cologne
• 2002-2006   Object-Oriented Programming, Lecture, Cologne University Bioinformatics Center.
• 2002-2006   Mathematical Foundations of Databases, Lecture, Cologne University Bioinformatics Center.
• 2002   Software Engineering, Lecture, Cologne University Bioinformatics Center.
• 2000   Bioinformatics, Seminar, University of Cologne
• 1995-1999  Teaching Assistant, Lectures in Pure Mathematics, University of Cologne

Supervision

1. James Wagner
   "Gibbs sampling for gapped motif discovery"
   MSc Thesis, Simon Fraser University, 2008 (co-supervised with Martin Ester)
2. Sandra Sazdovska
   "Self-creating gene ontologies"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2007
3. Pilar Soley
   "Statistical evaluation of self-created gene ontologies"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2007
4. Rileen Sinha
   "Learning genetic networks in Drosophila melanogaster - combined evaluation of transription regulation information and gene expression experiments"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2006
5. Mateus Patricio
   "Learning genetic networks in Drosophila melanogaster - combined evaluation of transription regulation information and gene expression experiments, Part 1"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2006
6. Marcelo Reis
   "Integration of transcriptional regulation information into the evaluation of gene expression experiments"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2005
7. Dr. Hiwot Chemu
   "Integration of transcriptional regulation information into the evaluation of gene expression experiments"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2005
8. Dr. Olof Persson
   "Statistical modeling of gene expression experiments: Determining an initial collection of models for clustering procedures"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2004
9. Xue Li
   "Hidden Markov model based analysis of gene expression time course data: Visualization of clustering results"
   Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2004
10. Markus Leber
    "Design of a fractional programming algorithm for DNA melting temperature determination"
    Thesis, CUBIC Graduate Course in Bioinformatics, University of Cologne, 2003